VMD - Revision history

Mcassdtm at 12:02, 21 November 2014

2014-11-21T12:02:22Z

Mcassdtm: /* Range of Data Formats */

2014-11-21T11:53:58Z

‎Range of Data Formats

Mcassdtm: /* Quality of Documentation/Tutorials */

2014-11-21T11:52:38Z

‎Quality of Documentation/Tutorials

Mcassdtm: /* Advantages */

2014-11-21T11:51:32Z

‎Advantages

Mcassdtm: /* Size of Data Set */

2014-11-21T11:49:04Z

‎Size of Data Set

Mcassdtm: /* Type of Data */

2014-11-21T11:46:30Z

‎Type of Data

Mcassdtm: /* Type of Data */

2014-11-21T11:46:14Z

‎Type of Data

Mcassdtm at 10:58, 21 November 2014

2014-11-21T10:58:53Z

Mcassdtm at 10:55, 21 November 2014

2014-11-21T10:55:39Z

Mcassdtm at 10:52, 21 November 2014

2014-11-21T10:52:08Z

@@ Line 27: / Line 27: @@
 *"no support for cif"
-====Support for data Formats====
+====Level of Support Available====
 ====Performance====
 ====Limitations====
 ====Comments====

← Older revision		Revision as of 11:53, 21 November 2014
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	====Range of Data Formats====		====Range of Data Formats====
		+
		+	Again, almost universally regarded as good, with two exceptions:
		+	*"temperamental with periodic images"
		+	*"no support for cif"

	====Support for data Formats====		====Support for data Formats====

← Older revision		Revision as of 11:52, 21 November 2014
Line 18:		Line 18:

	====Quality of Documentation/Tutorials====		====Quality of Documentation/Tutorials====
		+
		+	Documentation was almost universally regarded as good or very good. One respondent stated it was difficult to navigate.

	====Range of Data Formats====		====Range of Data Formats====

← Older revision		Revision as of 11:51, 21 November 2014
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	====Advantages====		====Advantages====
		+
		+	The most widely cited advantages are
		+	*quality of output
		+	*range of supported file types
		+	*simple to use/script

	====Quality of Documentation/Tutorials====		====Quality of Documentation/Tutorials====

← Older revision		Revision as of 11:49, 21 November 2014
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	====Size of Data Set====		====Size of Data Set====
		+
		+	This varies widely. About half the respondents have data sets smaller than a few GB. Two had data sets of 40 and 50 GB. Otherwise they had 1,000 or 30,000 atoms.

	====Advantages====		====Advantages====

@@ Line 4: / Line 4: @@
 ====Type of Data====
-Unsurprisingly, most reposndents use this software for molecular/atomic/protein visualisation.
+Unsurprisingly, most respondents use this software for molecular/atomic/protein visualisation.
 ====Size of Data Set====

← Older revision		Revision as of 11:46, 21 November 2014
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	====Type of Data====		====Type of Data====
		+
		+	Unsurprisingly, most reposndents use this software for molecular/atomic/protein visualisation.

	====Size of Data Set====		====Size of Data Set====

← Older revision		Revision as of 10:58, 21 November 2014
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−
	[[http://www.ks.uiuc.edu/Research/vmd/ VMD]] "is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer."		[[http://www.ks.uiuc.edu/Research/vmd/ VMD]] "is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer."
−

← Older revision		Revision as of 10:55, 21 November 2014
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−	[[http://www.ks.uiuc.edu/Research/vmd/]] ~~is described on the website as~~	+	[[http://www.ks.uiuc.edu/Research/vmd/ VMD]] "is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer."
−	"~~VMD~~ is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer."	+

← Older revision		Revision as of 10:52, 21 November 2014
Line 1:		Line 1:
		+
		+	[[http://www.ks.uiuc.edu/Research/vmd/]] is described on the website as
		+	"VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer."
		+
		+
		+
	====Type of Data====		====Type of Data====